PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s679881g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 468aa    MW: 51606.6 Da    PI: 4.3474
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s679881g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.14.2e-311869103
                        HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS
       HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100
                        +++d++++ ++sw   +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i+r+
  PDK_30s679881g001   1 MVDDPATDAIVSWGPANNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGRKDLLKTINRR 83 
                        899***********999*****************************************999.........********************** PP

                        XXX CS
       HSF_DNA-bind 101 kse 103
                        k +
  PDK_30s679881g001  84 KPS 86 
                        975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-33183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-48183IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-27183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.81E-30183IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.7E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MVDDPATDAI VSWGPANNSF VVWNTPEFAR DLLPKYFKHS NFSSFVRQLN TYGFRKVDPD  60
RWEFANEGFL RGRKDLLKTI NRRKPSHMHG QTQQPQPQNA SVAACVEVGK FGLEEEIERL  120
KRDKNVLMQE LVRLRQQQQS TSHQLQTLGK RLKGMERRQQ QMMSFLAKAM QSPGFLAQLV  180
QQTDNNRLIA RGNKKRRMPK QEGSLSGDSA SPDGQIIKYQ PLTNEAAKTM LRQILKAGSS  240
QPRLESFSNS DNLSLENFPS SSGAFDCSSS SQNSGVTLAE VPPNSGVPYV PSSSGFSAVG  300
LSSAVSEIQS SAGVTDMVSN DELPGMDVLS AVPEAIAATD ESIPELEGVM PDDSVAILSE  360
NFAMPDPETV YIDPITAGMD GAAVPIETEQ VSADANIDIL DDDPELSGII DSFWEEFFSS  420
PVTEETEEAE LSILEAMEDR PRPENGWDNS QNMEHLTEQM VLLSPDPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-2318627123Heat shock factor protein 1
5d5u_B4e-2318336129Heat shock factor protein 1
5d5v_B4e-2318336129Heat shock factor protein 1
5d5v_D4e-2318336129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008776696.10.0PREDICTED: heat stress transcription factor A-1-like
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A0E0D9P90.0A0A0E0D9P9_9ORYZ; Uncharacterized protein
STRINGORGLA03G0383200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-114heat shock factor 3